The 22 5S RNA sequences
>DL;AAURRA
>A.auricula-judae (mushroom) 5S ribosomal RNA
ATCCACGGCC ATAGGACTCT GAAAGCACTG CATCCCGTCC GATCTGCAAA
GTTAACCAGA GTACCGCCCA GTTAGTACCA CGGTGGGGGA CCACGCGGGA
ATCCTGGGTG CTGTGGTT**
>DL;MJURRA
>Microstroma juglandis 5S ribosomal RNA
ATCCACGGCC ATAGGACACA GAAAACATCG CATCCCGTCC GATCTGCGCA
ATCAAGCTGT GTACCGCCCA GTCAGTACCG GAGTGGGGGA CCATCCGGGA
ATCCTGCCAG GTGCTGTGGT T**
>DL;ESERRA
>Endophyllum sempervivi 5S ribosomal RNA
ATCCACGGCC ATAGGACCCT GAAAGCACCG CATCCCGTCC GATCTGCGCA
GTTAACCAGG GTGCCGCCTA GTTAGTACCA CGGTGGGGGA CCACGCGGGA
ATCCTAGGTG CTGTGGTT**
>DL;BHARRA
>Beneckea harveyi 5S ribosomal RNA
TGCTTGGCGA CCATAGCGAT TTGGACCCAC CTGATCTTCC ATTCCGAACT
CAGAAGTGAA ACGAATTAGC GCCGATGGTA GTGTGGGGCT TCCCCATGTG
AGAGTAGGAC ATCGCCAGGC TT**
>Bacillus brevis 5S ribosomal RNA
> ORGANISM Bacillus brevis
> Prokaryota; Bacteria; Endospore-forming rods and cocci;
> Bacillaceae.
TCTGGTGATG ATGGCGGAGG GGACACACCC GTTCCCATAC CGAACACGGC
CGTTAAGCCC TCCAGCGCCA ATGGTACTTG CTCCGCAGGG AGCCGGGAGA
GTAGGACGTC GCCAGGC**
>DL;BFIRRA
>Bacillus firmus 5S ribosomal RNA
> ORGANISM Bacillus firmus
> Prokaryota; Bacteria; Endospore-forming rods and cocci;
> Bacillaceae.
TCTGGTGGCG ATAGCGAGAA GGTCACACCC GTTCCCATAC CGAACACGGA
AGTTAAGCTT CTCAGCGCCG ATGGTAGTTA GGGGCTGTCC CCTGTGAGAG
TAGGACGCTG CCAGGC**
>DL;ECORRAA
>E.coli 5S ribosomal RNA ribonuclease-resistant region
> ORGANISM Escherichia coli
> Prokaryota; Bacteria; Gram-negative facultatively anaerobic rods;
> Enterobacteriaceae.
TGCCTGGCGG CCGTAGCGCG GTGGTCCCAC CTGACCCCAT GCCGAACTCA
GAAGTGAAAC GCCGTAGCGC CGATGGTAGT GTGGGGTCTC CCCATGCGAG
AGTAGGGAAC TGCCAGGCAT **
>DL;BPARRA
>Bacillus pasteurii 5S ribosomal RNA
TTTGGTGGCG ATAGCGAAGA GGTCACACCC GTTCCCATAC CGAACACGGA
AGTTAAGCTC TTCAGCGCCG ATGGTAGTTG GGGTGTTAGC CCCTGCAAGA
GTAGGACGTT GCCAGGC**
>DL;EARRRA
>Equisetum arvense (horse tail) cytoplasmic 5S ribosomal RNA
GTGGTGCGGT CATACCAGCG CTAATGCACC GGATCCCATC AGAACTCCGC
AGTTAAGCGC GCTTGGGCCA GAACAGTACT GGGATGGGTG ACCTCCCGGG
AAGTCCTGGT GCCGCACCCC **
>DL;CYRRRA
>C.revoluta 5S ribosomal RNA
> ORGANISM Cycas revoluta
> Eukaryota; Planta; Spermatophyta; Gymnospermae; Gymnospermidae;
> Cycadales.
GGGTGCGATC ATACCAGCGT TAATGCACCG GATCCCATCA GAACTCCGCA
GTTAAGCGCG CTTGGGTTGG AGTAGTACTA GGATGGGTGA CCTCCTGGGA
AGTCCTAATA TTGCACCCTT **
>DL;DACRRA
>Dryopteris acuminata 5S ribosomal RNA
>SOURCE Dryopteris acuminata whole organism rRNA.
> ORGANISM Dryopteris acuminata
> Eukaryota; Planta; Pteridophyta.
GTGGTGCGGT CATACCAGCG CTAATGCACC GGATCCCATC AGAACTCCGA
AGTTAAGCGC GCTTGGGCCA GAACAGTACT GGGATGGGTG ACCTCCCGGG
AAGTCCTGGT GCTGCACCCT T**
>DL;RYERRA
>Rye (S.cereale) 5S rRNA
GGATGCGATA CCATCAGCAC TAAAGCACCG GATCCATCAG AACTCCGAAG
TTAAGCGTGC TTGGGCGAGA GTAGTACTAG GATGGGTGAC CTCCTGGGAA
GTCCTCGTGT TGCATCCT**
>DL;XELRRA
>X.laevis 5S ribosomal RNA
GCCTACGGCC ACACCACCCT GAAAGTGCCT GATCTCGTCT GATCTCAGAA
GCGATACAGG GTCGGGCCTG GTTAGTACCT GGATGGGAGA CCGCCTGGGA
ATACCAGGTG TCGTAGGCTT **
>DL;HUMRRA
>Human 5S ribosomal RNA
GTCTACGGCC ATACCACCCT GAACGCGCCC GATCTCGTCT GATCTCGGAA
GCTAAGCAGG GTCGGGCCTG GTTAGTACTT GGATGGGAGA CCGCCTGGGA
ATACCGGGTG CTGTAGGCTT T**
>DL;FSBRR5ST
>rainbow trout (salmo gairdnerii) 5s ribosomal rna
GCTTACGGCC ATACCAGCCT GAATACGCCC GATCTCGTCC GATCTCGGAA
GCTAAGCAGG GTCGGGCCTG GTTAGTACTT GGATGGGAGA CCGCCTGGGA
ATACCAGGTG CTGTAAGCTT **
>DL;DRORRA
>D.melanogaster 5S rRNA
GCCAACGACC ATACCACGCT GAATACATCG GTTCTCGTCC GATCACCGAA
ATTAAGCAGC GTCGCGGGCG GTTAGTACTT AGATGGGGGA CCGCTTGGGA
ACACCGCGTG TTGTTGGCCT **
>DL;CHKRRA
>Chicken 5S ribosomal RNA
GCCTACGGCC ATCCCACCCT GGTAACGCCC GATCTCGTCT GATCTCGGAA
GCTAAGCAGG GTCGGGCCTG GTTAGTACTT GGATGGGAGA CCTCCTGGGA
ATACCGGGTG CTGTAGGCTT **
>DL;JSUCPRRA
>Jungermannia subulata (liverwort) chloroplast 5S ribosomal RNA
TTCTGGTGTC TCAGGCGTGG AGGAACCACA CCAATCCATC CCGAACTTGG
TGGTGAAACT CTATTGCGGT GACGATACTG TAGGGGAAGC CCGATGGAAA
AATAGCTCGA CGCCAGGAT**
>DL;DACCPRRAZ
>Dryopteris acuminata chloroplast 5S ribosomal RNA
> ORGANISM Chloroplast Dryopteris acuminata
> Chloroplastida; Pteridophyta.
TATTCTGGTG TCCCAGGCGT AGAGGAACCA CACCGATCCA TCTCGAACTT
GGTGGTGAAA CTCTGCCGCG GTAACCAATA CTCGGGGGGG GCCCTGCGGA
AAAATAGCTC GATGCCAGGA TA**
>DL;SPICPRR5S
>Spinach (S.oleracea) chloroplast 5S ribosomal RNA, complete
TATTCTGGTG TCCTAGGCGT AGAGGAACCA CACCAATCCA TCCCGAACTT
GGTGGTTAAA CTCTACTGCG GTGACGATAC TGTAGGGGAG GTCCTGCGGA
AAAATAGCTC GACGCCAGGA TG**
>DL;MPOCPRRA
>Marchantia polymorpha (liverwort) chloroplast 5S ribosomal RNA
TTCTGGTGTC TTAGGCGTAG AGGAACCACA CCAATCCATC CCGAACTTGG
TGGTGAAACT CTATTGCGGT GACAATACTT TAGGGGAAGC CCTATGGAAA
AATAGCTCGA CGCCAGGAT**
>DL;TOBCPRRA1
>Tobacco chloroplast 5S large rRNA
TATTCTGGTG TCCTAGGCGT AGAGGAACCA CACCAATCCA TCCCGAACTT
GGTGGTTAAA CTCTACTGCG GTGACGATAC TGTAGGGGAG GTCCTGCGGA
AAAATAGCTC GACGCCAGGA T**
Ole Caprani
ocaprani@daimi.aau.dk