@Article{Survey,
  author = 	 {S. C. Chan and A. K. C. Wong and D. K. Y. Chiu},
  title = 	 {A Survey Of Multiple Sequence Comparison Methods},
  publisher = 	 {Pergamon Press plc},
  journal = 	 {Bulletin of Mathematical Biology},
  year = 	 {1992},
  volume = 	 {54(4)},
  pages = 	 {563-598}
}

@Article{Dijkstra,
  author = 	 {E. W. Dijkstra},
  title = 	 {A note on two problems in connexion with graphs},
  journal = 	 {Nummer. Math.},
  year = 	 {1959},
  volume = 	 {1},
  pages = 	 {269-271}
}

@Article{ProgressiveAlignment,
  author = 	 {D.-F. Feng and R. F. Doolittle},
  title = 	 {Progressive sequence alignment as prerequisite to correct
                  phylogenetic trees},
  journal = 	 {Journal of Molecular Evolution},
  year = 	 {1987},
  volume = 	 {25},
  pages = 	 {351-360}
}

@Misc{GentleGuide,
  author = 	 {F{\"u}llen, Georg},
  title = 	 {A Gentle Guide to Multiple Alignment 2.03},
  howpublished = {http://www.techfak.uni-bielefeld.de/bcd/Curric/MulAli/\linebreak[0]mulali.html},
  year = 	 {1997},
  month =        {March}
}

@Misc{GenBank,
  title =        {GenBank},
  key =          {GenBank},
  howpublished = {http://www.ncbi.nlm.nih.gov/}
}

@InProceedings{msa,
  author = 	 {Sandeep K. Gupta and John D. Kececioglu and Alejandro
                  A. Sch\"affer},
  title = 	 {Making the Shortest-Paths Approach to Sum-of-Pairs Multiple
		  Sequence Alignment More Space Efficient in Practice (Extended
		  Abstract)},
  booktitle =    {Proceedings of the Sixth Annual Symposium on Combinatorial
                  Pattern Matching},
  year =         {1995}
}

@InBook{MultipleStringComparison,
  author = 	 {Dan Gusfield},
  title = 	 {Algorithms On Strings: A Dual View from Computer Science and
                  Computational Molecular Biology},
  chapter = 	 {13, Multiple String Comparison - The Holy Grail},
  publisher = 	 {Cambridge University Press},
  year = 	 {1997}
}

@Misc{MSA_discussion,
  author = 	 {Kececioglu, John D. and Robert Giegerich and others},
  title = 	 {Discussion Theme: The {MSA} algorithm},
  howpublished = {http://www.techfak.uni-bielefeld.\linebreak[0]de/bcd/Lectures/kececioglu.html},
  year = 	 {1995},
  month =        {July}
}

@Book{Overview,
  author = 	 {Eugene W. Myers},
  title = 	 {An Overview of Sequence Comparison Algorithms in Molecular
		  Biology},
  publisher = 	 {Department of Computer Science, The University of Arizona,
		  Tucson, TR 91-29},
  year = 	 {1991},
  month =        {December}
}

@Article{Sankoff,
  author = 	 {David Sankoff},
  title = 	 {Matching sequences under deletion-insertion constraints},
  journal = 	 {Proc. Natl. Acad. Sci.},
  year = 	 {1972},
  volume = 	 {68},
  pages = 	 {4-6}
}

@InBook{Intro,
  author =       {Michael S. Waterman},
  title = 	 {Introduction to computational Biology, Maps, sequences and
		  genomes Interdisciplinary Statistics},
  publisher = 	 {Chapman \& Hall, London, UK},
  chapter =      {1 \& 8-10},
  year = 	 {1995}
}

@InCollection{ComputerAlignment,
  author = 	 {Michael S. Waterman and Jana Joyce and Mark Eggert},
  title = 	 {Computer Alignment of Sequences},
  booktitle = 	 {Phylogenetic Analysis of {DNA} Sequences},
  publisher = 	 {Oxford University Press},
  chapter = 	 {4},
  editor =       {M. M. Miyamoto and Cracraft},
  year = 	 {1991}
}