Mantis - All Projects
Viewing Issues ( 1 - 40 )
P
ID
#
Category
Severity
Status
Updated
Summary
0000253
[
CoaSim
]
Feature Request
feature
new
04-13-10
Rescale-markers
0000252
[
CoaSim
]
Bug
minor
new
05-04-09
test stress Google
0000250
1
[
SNPFile
]
Bug
minor
acknowledged
(mailund)
01-20-09
configure script detects that boost libraries are missing, but creates makefile anyway.
0000249
[
Blossoc
]
Feature Request
minor
resolved
(mailund)
01-20-09
Quantitative traits
0000251
[
SNPFile
]
Documentation
minor
resolved
01-20-09
add a link to the article in SNPfile's home page
0000244
[
SNPFile/Python
]
major
resolved
(jn)
07-02-08
Update to handle int32_t-style typenames instead of the old int-style.
0000229
[
HapCluster++
]
Bug
minor
resolved
(pl)
05-08-08
Clean up state.hh
0000238
[
HapCluster++
]
Feature Request
minor
resolved
(pl)
05-08-08
Add regression tests
0000236
[
HapCluster++
]
Documentation
minor
resolved
(mailund)
05-08-08
Update documentation to describe convergence test and ESS
0000228
[
HapCluster++
]
Documentation
minor
resolved
(mailund)
05-08-08
Complete Doxygen documentation
0000224
[
HapCluster++
]
Feature Request
minor
resolved
(mailund)
05-08-08
Genome-Wide scans
0000237
[
HapCluster++
]
Feature Request
minor
resolved
(pl)
05-01-08
Full coverage unit test
0000235
[
HapCluster++
]
Other
minor
resolved
(pl)
05-01-08
Test that the ESS estimation is reasonable
0000239
[
HapCluster++
]
Feature Request
major
assigned
(pl)
02-21-08
Do not use a complete haplotype matrix when it isn't necessary in the phasing
0000233
[
HapCluster++
]
Feature Request
minor
resolved
(mailund)
02-17-08
Add verbose output to the new "Chain" MCMC
0000222
[
HapCluster++
]
Feature Request
minor
resolved
(mailund)
02-17-08
Sample effective (rather than correlated) samples
0000234
[
HapCluster++
]
Feature Request
minor
resolved
(mailund)
02-17-08
Estimate ESS
0000201
[
HapCluster++
]
Feature Request
minor
resolved
(mailund)
02-17-08
Add convergence checking rather than fixed burn-in period.
0000230
[
HapCluster++
]
Feature Request
minor
resolved
(mailund)
02-17-08
Merge run_phased_mcmc with run_unphased_mcmc
0000232
[
HapCluster++
]
Feature Request
minor
resolved
(mailund)
02-17-08
Remove HapCluster matrices
0000231
[
HapCluster++
]
Feature Request
minor
resolved
(mailund)
02-17-08
Re-factor MCMC to use dynamic classes to specialize to the different types of data
0000153
[
HapCluster++
]
Feature Request
minor
assigned
(pl)
02-17-08
Improve test-suite
0000156
2
[
CoaSim
]
Bug
minor
assigned
(mailund)
06-05-07
problem building on Ubuntu
0000177
[
SNPFile
]
Feature Request
minor
confirmed
05-30-07
combine marker-names and positions file for text2snpfile
0000030
[
Blossoc
]
Feature Request
minor
acknowledged
05-29-07
dealing with missing data
0000107
[
Blossoc
]
Feature Request
major
acknowledged
07-03-06
Port to Qt4
0000082
[
Blossoc
]
Documentation
minor
assigned
(cstorm)
06-21-06
Getting started for mac and win
0000075
[
Blossoc
]
Feature Request
major
assigned
(cstorm)
06-20-06
Binary Mac installation
0000074
[
Blossoc
]
Feature Request
major
assigned
(cstorm)
06-20-06
Make Windows binary package...
0000036
[
CoaSim
]
Feature Request
major
assigned
(mheide)
04-04-06
Test of statistical properties of simulated data...
0000054
1
[
CoAnnealing
]
major
resolved
(mailund)
03-16-06
markov chain messed up
0000050
[
CoaSim
]
Bug
tweak
new
02-15-06
test of nestedness of overlapping epochs
0000048
[
CoaSim
]
Feature Request
trivial
new
02-12-06
Add hyperlinks in the CoaSim/Guile manual
0000046
[
CoaSim
]
Bug
minor
new
02-11-06
ARG nodes do not hash correctly in the Python bindings
0000033
[
CoaSim
]
Feature Request
minor
confirmed
02-07-06
Both population and global information should be provided to callbacks
0000035
[
CoaSim
]
Bug
minor
confirmed
02-07-06
name clashes with population structure
0000002
[
CoaSim
]
Feature Request
major
confirmed
10-15-05
Better test of scheme-modules
0000021
[
GeneRecon
]
Feature Request
minor
confirmed
10-15-05
QTL support
0000009
[
GeneRecon
]
Feature Request
minor
confirmed
10-13-05
Checkpointing for suspending
0000003
[
CoaSim
]
Feature Request
minor
confirmed
10-11-05
Placement of markers relative to genealogy length