The Newick format is used to describe a phylogenetic tree as a string of text. Parentheses are used to group sequence names and branch lengths are included using colons followed by the length. The text string is ended by a semicolon. An example phylogeny: ((Human:0.1,Gorilla:0.1):0.4,(Mouse:0.2,Rat:0.2):0.3); This describes the following phylogeny:
The topology of the phylogeny is specified by omitting branch lengths: ((Human,Gorilla),(Mouse,Rat)); |