Publications:

 

 

Peer-reviewed journal papers:

 

 

David J Bertioli, Marcio C Moretzsohn, Lene H Madsen, Niels Sandal, Soraya CM Leal-Bertioli, Patricia M Guimaraes, Birgit K Hougaard, Jakob Fredslund, Leif Schauser, Anna M Nielsen, Shusei Sato, Satoshi Tabata, Steven B Cannon, Jens Stougaard

An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes

BMC Genomics 2009, 10:45

 

 

Jakob Fredslund

DATFAP: A Database of Primers and Homology Alignments for Transcription Factors from 13 Plant Species

BMC Genomics 2008, 9:140

 

 

Hougaard BK, Madsen LH, Sandal N, Moretzsohn MC, Fredslund J, Schauser L, Nielsen AM, Rohde T, Sato S, Tabata S, Bertioli DJ, Stougaard J

Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis

Genetics 179:2299-2312, August 2008.

 

 

Daniel Dalevi, Todd Z. DeSantis, Jakob Fredslund, Gary Andersen, Victor Markowitz, Philip Hugenholtz

Automated assignment of groups in large phylogenetic trees using GRUNT: Grouping, Ungrouping, Naming Tool

BMC Bioinformatics 2007, 8:402

 

 

Jakob Fredslund, Mette Lange

primique: automatic design of specific PCR primers for each sequence in a family

BMC Bioinformatics 2007, 8:369

 

 

Jakob Fredslund

PHY∙FI: fast and easy online creation and manipulation of phylogeny color figures  [highly accessed]

BMC Bioinformatics 2006, 7:315

 

 

Jakob Fredslund, Lene H. Madsen, Birgit K. Hougaard, Anna Marie Nielsen, David Bertioli, Niels Sandal, Jens Stougaard, Leif Schauser

A general pipeline for the development of anchor markers for comparative genomics in plants

BMC Genomics 2006, 7:207

 

 

Jakob Fredslund, Lene H. Madsen, Birgit K. Hougaard, Niels Sandal, Jens Stougaard, David Bertioli, Leif Schauser

GeMprospector - Online Design of Cross-Species Genetic Marker Candidates in Legumes and Grasses

Nucleic Acids Research 2006 34 (Web Server issue): W670-W675

 

 

Jakob Fredslund, Leif Schauser, Lene Heegard Madsen, Niels Sandal, Jens Stougaard,

PriFi - Using a Multiple Alignment of Related Sequences to Find Primers for Amplification of Homologs,

Nucleic Acids Research 2005 33(Web Server issue):W516-W520; doi:10.1093/nar/gki425

 

 

Jakob Fredslund, Maja J Matarić,

A General Algorithm for Robot Formations Using Local Sensing and Minimal Communication,

In IEEE Transactions on Robotics and Automation, Special Issue on Multi Robot Systems, 18(5):837-846, October 2002.

 

 

Lola D. Cañamero, Jakob Fredslund,

I Show You How I Like You: Emotional Human-Robot Interaction through Facial Expression and Tactile Stimulation,

In IEEE Transactions on Systems, Man, and Cybernetics, Part A, vol. 31, no. 5, pp. 454-459, September 2001.

 

 

 

Book chapter:

 

 

Ole Caprani, Jakob Fredslund, Jens Jacobsen, Line Kramhøft, Rasmus B. Lunding, Jørgen Møller Ilsø, and Mads Wahlberg,

Evolution of Computer Bugs   an Interdisciplinary Team Work,

In Behind the Scenes of Multimedia Production, Kim H. Madsen, Lars. Qvortrup, ed. Springer-Verlag, New York, 2003.

 

 

 

Peer-reviewed conference papers:

 

 

David Bertioli, Marcio Moretzsohn, Soraya Leal Bertioli, Patricia Guimarães, Lene Madsen, Jakob Fredslund, Birgit Hougaard, Leif Schauser, Niels Sandal, Satoshi Tabata, Jens Stougaard

Comparative mapping of Arachis, a basal genus in the Papilionoideae, with the model legumes Lotus Japonicus and Medicago Truncatula

Submitted to the 6th European Conference on Grain Legumes, Lisbon, Portugal.

 

 

Leif Schauser, Jakob Fredslund, Lene Heegard Madsen, Niels Sandal, Jens Stougaard,

A computational pipeline towards the development of comparative anchor tagged sequence (CATS) markers,

In Proceedings of the International Grassland Congress (IGC), 2005. In Humphrey MO (Ed) Wageningen Academic Publishers, pp. 73-81.

 

 

Jakob Fredslund, Jotun Hein, Tejs Scharling,

A large version of the small parsimony problem.

In Proceedings of the 3rd workshop on algorithms in bioinformatics (WABI 2003), pp. 417-432. September 15th-19th, 2003, Budapest, Hungary.

 

 

Jakob Fredslund, Maja J Matarić,

Huey, Dewey, Louie, and GUI – Commanding Robot Formations,

In Proceedings of the 2002 IEEE International Conference on Robotics and Automation (ICRA'02), May 11–15, 2002, Washington, D.C., USA.

 

 

Jakob Fredslund, Maja J Matarić,

Robots in Formation Using Local Information,

In Proceedings of the 7th International Conference on Intelligent Autonomous Systems (IAS-7), Marina del Rey, California, USA, March 25–27, 2002.

 

 

Jakob Fredslund, Maja J Matarić,

Robot Formations Using Only Local Sensing and Control,

In Proceedings of the IEEE International Symposium on Computational Intelligence in Robotics and Automation (CIRA-01) Banff, Alberta, Canada, July 29–August 1, 2001.

 

 

Lola D. Cañamero, Jakob Fredslund,

How Does It Feel? Emotional Interaction with a Humanoid LEGO Robot,

In K. Dautenhahn, ed., Socially Intelligent Agents: The Human in the Loop. Papers from the AAAI 2000 Fall Symposium in Cape Cod, Massachusetts, USA, pp. 23–28. AAAI Press, Menlo Park, California, USA.

 

 

Henrik Hautop Lund, Jens Aage Arendt, Jakob Fredslund, Luigi Pagliarini,

Ola: What Goes Up, Must Fall Down,

In Proceedings of Artificial Life and Robotics 1999 (AROB'99), pp. I-9 – I-15, ISAROB, Oita, 1999.

 

 

 

Posters:

 

 

David Bertioli, Niels Sandal, Lene Madsen, Jakob Fredslund, Birgit Hougaard, Leif Schauser, Anna Marie Nielsen, Jens Stougaard, Satoshi Tabata, Marcio Moretzsohn, Soraya Leal Bertioli, Patricia Guimarães

Comparative mapping of peanut (Arachis hypogaea) with the model legumes Lotus Japonicus and Medicago Truncatula

Generation Challenge Program General Meeting on Synteny, 2007.

 

 

Hougaard, B.K., Madsen, L.H., Fredslund, J., Schauser, L., Nielsen, A.M., Sandal, N.N., Rohde, T., Jacobsen, R.H., Stougaard, J. 2007,

Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics

Presented at the Plant Biotech Denmark Annual Meeting 2007, København

 

Hougaard, B.K., Madsen, L.H., Fredslund, J., Schauser, L., Nielsen, A.M., Sandal, N.N., Rohde, T., Jacobsen, R.H., Bertioli, D.J., Tohme, J., Blair, M., Stougaard, J. 2006, Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics

Presented at the 7th European Nitrogen Fixation Conference, Aarhus, 22.7.2006 - 26.7.2006.

 

Hougaard, B.K., Madsen, L.H., Fredslund, J., Schauser, L., Nielsen, A.M., Sandal, N.N., Rohde, T., Jacobsen, R.H., Bertioli, D.J., Tohme, J., Blair, M., Stougaard, J. 2006, Development of Legume Anchor Markers: a bioinformatic driven tool for genetic mapping and comparative genomics

Presented at Crop Genomics, Trait Analysis and Breeding, Hinxton, 8.11.2006 - 11.11.2006.

 

Jakob Fredslund, Jotun Hein, Tejs Scharling,

Determining the Optimal Set of Indels Explaining the Gaps in a Multiple Alignment Using Affine Gap Cost Function

Presented at the International Conference on Research in Computational Molecular Biology (RECOMB 2003) April 10th – 13th, Berlin, Germany.

 

 

Jakob Fredslund,

Teaching a new dog old tricks   the Assumption Architecture,

In Proceedings of the Learning'00 Workshop, Department of Technology and Communication, Universidad Carlos III, Madrid, Spain, October 25–27, 2000.

 

 

 

Other:

 

 

Jakob Fredslund,

Superjordnøddernes Hemmelighed

Aktuel Naturvidenskab, 6:12-15, December 2005

 

 

Jakob Fredslund, Maja J Matarić,

Robot Formations,

In AliveArt Handbook, Educational CD-ROM, Elisa Giaccardi and Luigi Pagliarini, ed., Limited Edition. Rome, October 2001. More information: luigi@ daimi.au.dk.

 

 

Interview in the promotion film for the Natural Sciences Den Hotteste Forskning (2003, director Mette Thybo), distributed on schools nation-wide. http://www.sdu.dk/Nat/fak/nyheder/show_news.php?id=73&lang=dk

 

 

Appearance of my robot Feelix in two children’s books about robots:  Robotics (cool science), Helena Domaine, Lerner Publications (ISBN 0822521121), and Robot (eyewitness), Rodger Francis Bridgman, Dorling Kindersley (ISBN 0756602548).

 

 

Jakob Fredslund,

Simplicity Applied in Projects Involving Embodied, Autonomous Robots

PhD Dissertation, Department of Computer Science, Aarhus University, Denmark, 2002.

 

 

Jakob Fredslund,

The Assumption Architecture, A Training System for LEGO robots,

Progress Report, Department of Computer Science, Aarhus University, Denmark, 1999.